Dr. Alexander Churkin

churkin foto Postdoc
Outside lecturer

Contacts

Email:
Homepage:
Office: 115 in 54 building
Phone number: 08-6461204
Fax number: 08-6477650
Box number: 27
Office hours: Sun 14:00-16:00

Teaching

Fall 2004-2005 20219011 Computer Programming
Fall 2005-2006 20219011 Computer Programming
Spring 2006 20219081 C Programming
Fall 2006-2007 20219011 Computer Programming
Fall 2006-2007 20219011 Computer Programming
Fall 2007-2008 20219011 Computer Programming
Spring 2008 20219011 Computer Programming
Spring 2008 20219081 C Programming
Fall 2008-2009 20219011 Computer Programming
Spring 2009 20219081 C Programming
Fall 2009-2010 37111661 Computer Programming in C 3
Fall 2009-2010 20219011 Computer Programming
Fall 2009-2010 20219081 C Programming
Fall 2009-2010 20219031 Computer Programming in java
Spring 2010 20219031 Computer Programming in java
Fall 2010-2011 20219011 Computer Programming
Spring 2011 20219031 Computer Programming in java
Fall 2011-2012 20219031 Computer Programming in java
Spring 2012 20219031 Computer Programming in java
Fall 2012-2013 20219011 Computer Programming
Spring 2013 20219031 Computer Programming in java

Awards & Honnors

2006 - Kreitman fellowship

Selected publications all BibTex

 
Articles
BibTeX
A. Churkin, I. Gabdank, D. Barash. The RNAmute web server for the mutational analysis of RNA secondary structures. Nucleic Acids Research, In Press, April 2011.
BibTeX
D. Barash, A. Churkin. Mutational Analysis in RNAs: Comparing Programs for RNA Deleterious Mutation Prediction. Briefings in Bioinformatics, 12(2):104-114, 2011. Software Review.
BibTeX
A. Churkin, M. Cohen, Y. Shemer-Avni, D. Barash. Bioinformatic Analysis of the Neutrality of RNA Secondary Structure Elements Across Genotypes Reveals Evidence for Direct Evolution of Genetic Robustness in HCV. Journal of Bioinformatics and Computational Biology, 8(6):1013-1026, 2010.
BibTeX
A. Churkin, D. Barash. An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions. BMC Bioinformatics, 9(1):222, April 2008.
BibTeX
Aouacheria A, Navratil V, López-Pérez R, Gutiérrez NC, Churkin A, Barash D, Mouchiroud D, Gautier C. In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions. BMC Genomics, 8:2, January 2007.
BibTeX
A. Churkin, D. Barash. RNAMute: RNA Secondary Structure Mutation Analysis Tool. BMC Bioinformatics, pages 221 - 227, April 2006.
BibTeX
A. Churkin, D. Barash. Structural Analysis of Single-Point Mutations Given an RNA Sequence. EURASIP Journal on Applied Signal Processing, Special Issue on Bioinformatics, 56246:1-7, 2006.